Three US House of Representatives committees subpoenaed Perry on October 10 for any role he played in Trump's push to pressure Ukraine President Volodymyr Zelenskiy to investigate his political rival, former Democratic Vice President Joe Biden and his son.

Melissa Burnison, an assistant energy secretary, said in a letter on Friday to the three committees, that the impeachment inquiry had not been properly authorised.

"Even if the inquiry was validly authorised, much of the information sought in the subpoena appears to consist of confidential Executive Branch communications that are potentially protected by executive privilege," said the letter, a copy of which was obtained by Reuters.

"However, the Department remains committed to working with Congress on matters of mutual importance conducted in accordance with proper authorisations and procedures," it said.

The energy department's response follows the lead of the White House, which has said it would refuse to cooperate with an "illegitimate, unconstitutional" congressional impeachment inquiry.

Perry has found himself engulfed in Congress's impeachment investigation into whether the Republican president improperly withheld nearly $US400 million ($A584 million) in military aid for Ukraine in exchange for Kiev investigating his Democratic political rivals.

The impeachment probe stems from Trump's efforts to push Zelenskiy in a July 25 call to investigate his unsubstantiated allegation that Biden improperly tried to aid his son Hunter's interests in a gas company in Ukraine.

Perry, who submitted his resignation to Trump on Thursday, told Fox News in an interview on Friday morning that he had urged Trump to call Zelenskiy to talk about fighting corruption and how US liquefied natural gas could help ease dependency on gas from Russia.

He said he never talked about Biden in any conversations with Zelenskiy or the White House.

Australian Associated Press